Extract Runs with GEO Accession Number or GSM Number. — ExtractRun • GEfetch2R

Extract Runs with GEO Accession Number or GSM Number.

Usage

ExtractRun(gsm = NULL, acce = NULL, platform = NULL, parallel = TRUE, ...)

Arguments

gsm: GSM number. Default: NULL (use acce).
acce: GEO accession number. Default: NULL (use gsm). acce and gsm cannot be both NULL.
platform: Platform information/field. Default: NULL (all platforms).
parallel: Logical value, whether to process GSM parallelly. Default: TRUE.
...: Parameters for getGEO. Used when acce is not NULL.

Value

Dataframe contains GSM and Runs.

Examples

if (FALSE) {
GSE186003.runs <- ExtractRun(acce = "GSE186003", platform = "GPL24247", parallel = FALSE)
}