Usage
DownloadSRA(
gsm.df,
prefetch.path = NULL,
out.folder = NULL,
prefetch.paras = "-X 100G"
)
Arguments
- gsm.df
Dataframe contains GSM and Run numbers, obtained from ExtractRun.
- prefetch.path
Path to prefetch. Default: NULL (conduct automatic detection).
- out.folder
Output folder. Default: NULL (current working directory).
- prefetch.paras
Parameters for prefetch. Default: "-X 100G".
Value
Dataframe contains failed runs or NULL.
Examples
# GSE186003.runs = ExtractRun(acce = "GSE186003", platform = "GPL24247")
# GSE186003.down = DownloadSRA(gsm.df = GSE186003.runs, prefetch.path = "/path/to/prefetch",
# out.folder = "/path/to/output")