Function reference
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Bam2Fastq() - Convert bam files to fastq files.
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DownloadBam() - Download bam.
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DownloadSRA() - Download SRA.
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ExportSeurat() - Export SeuratObject to Other Formats.
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ExtractCBComposition() - Extract Cell Type Composition of UCSC Cell Browser Datasets.
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ExtractCBDatasets() - Extract UCSC Cell Browser Datasets with Attributes.
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ExtractCELLxGENEMeta() - Extract Metadata of CELLxGENE Datasets with Attributes.
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ExtractGEOExp() - Extract Raw Count Matrix or Fortmat Supplementary Files to 10x.
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ExtractGEOExpSupp() - Extract Raw Count Matrix from Supplementary Files.
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ExtractGEOExpSupp10x() - Fortmat Supplementary Files to 10x.
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ExtractGEOExpSuppAll() - Extract Raw Count Matrix from Supplementary Files or Fortmat Supplementary Files to 10x.
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ExtractGEOInfo() - Extract GEO Study Information.
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ExtractGEOMeta() - Extract Sample Metadata from GEO.
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ExtractGEOSubMeta() - Extract Sample Metadata.
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ExtractHCAMeta() - Extract Metadata of Human Cell Atlas Projects with Attributes.
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ExtractPanglaoDBComposition() - Extract Cell Type Composition of PanglaoDB Datasets.
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ExtractPanglaoDBMeta() - Extract Metadata of scRNA-seq Datasets in PanglaoDB.
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ExtractRun() - Extract Runs with GEO Accession Number or GSM Number.
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ExtractZenodoMeta() - Prepare Dataframe with Zenodo DOIs.
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ImportSeurat() - Convert Other Formats to SeuratObject.
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PanglaoDBComposition - All Sample Composition of PanglaoDB Datasets
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PanglaoDBMeta - All Sample Metadata of PanglaoDB Datasets
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ParseCBDatasets() - Download UCSC Cell Browser Datasets.
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ParseCELLxGENE() - Download CELLxGENE Datasets.
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ParseGEO() - Download Matrix from GEO and Load to Seurat.
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ParseHCA() - Download Human Cell Atlas Datasets.
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ParsePanglaoDB() - Parse PanglaoDB Data.
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ParseZenodo() - Download Data with Zenodo DOI.
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SCEAnnData() - Data Format Conversion between SingleCellExperiment and AnnData.
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SCELoom() - Data Format Conversion between SingleCellExperiment and loom.
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ShowCBDatasets() - Show All Available Datasets in UCSC Cell Browser.
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ShowCELLxGENEDatasets() - Show All Available Datasets in CELLxGENE.
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ShowHCAProjects() - Show All Available Projects in Human Cell Atlas.
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SplitSRA() - Split SRA to fastq Files and Format to 10x Standard Style.
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StatDBAttribute() - Stat Database Attributes.