Download Data with Zenodo DOI.

Usage

ParseZenodo(
  doi = NULL,
  file.ext = c("rdata", "rds", "h5ad"),
  doi.df = NULL,
  out.folder = NULL,
  timeout = 1000,
  quiet = FALSE,
  parallel = TRUE
)

Arguments

doi: A vector of Zenodo DOIs to download. Default: NULL.
file.ext: The valid file extension for download. When NULL, use all files. Default: c("rdata", "rds", "h5ad").
doi.df: DOI dataframe for download. This is useful when something wrong happens in downloading (e.g. MD5 verification failure, DownloadZenodo will return a dataframe contains failure terms.). Default: NULL. It is required to provide either doi or doi.df.
out.folder: The output folder. Default: NULL (current working directory).
timeout: Maximum request time. Default: 1000.
quiet: Logical value, whether to show downloading progress. Default: FALSE (show).
parallel: Logical value, whether to download parallelly. Default: TRUE. When "libcurl" is available for download.file, the parallel is done by default (parallel can be FALSE).

Value

When successful, NULL. When MD5 verification failure, a dataframe contains failure terms.

Examples

# multi.dois.parse = ParseZenodo(doi = c("1111", "10.5281/zenodo.7243603", "10.5281/zenodo.7244441"), file.ext = c("rdata", "rds"),
#                                out.folder = "/path/to/outfoder")