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Extract Raw Count Matrix from Supplementary Files.

ExtractGEOExpSupp.Rd

Extract Raw Count Matrix from Supplementary Files.

Usage

ExtractGEOExpSupp(acce, timeout = 3600, supp.idx = 1)

Arguments

acce

GEO accession number.

timeout

Timeout for download.file. Default: 3600.

supp.idx

The index of supplementary files to download. Default: 1.

Value

A dataframe.

Examples

# for bulk rna-seq
# count.mat = ExtractGEOExpSupp(acce = "GSE149838")
# count.mat = ExtractGEOExpSupp(acce = "GSE147507")
# count.mat = ExtractGEOExpSupp(acce = "GSE147507", supp.idx = 2)
# count.mat = ExtractGEOExpSupp(acce = "GSE122774")
# # for single cell matrix
# count.mat = ExtractGEOExpSupp(acce = "GSE94820")