Parse PanglaoDB Data.

Usage

ParsePanglaoDB(
  meta,
  cell.type = "All",
  include.gene = NA,
  exclude.gene = NA,
  merge = FALSE
)

Arguments

meta: Metadata contains "SRA", "SRS", "Tissue", "Protocol", "Species", can be obtained with ExtractPanglaoDBMeta.
cell.type: Extract samples with specified cell types. For samples without SRS (notused), this value can only be "All" or "None", or these samples will be filtered. Obtain available values with StatDBAttribute, one or multiple value. Default: "All".
include.gene: Include cells expressing the genes. Default: NA.
exclude.gene: Exclude cells expressing the genes. Default: NA.
merge: Logical value, whether to merge Seurat list. Default: FALSE.

Value

Seurat object (if merge is TRUE) or list of Seurat objects (if merge is FALSE).

Examples

# hsa.meta = ExtractPanglaoDBMeta(species = "Homo sapiens", protocol = c("Smart-seq2", "10x chromium"),
#                                 show.cell.type = TRUE, cell.num = c(1000,2000))
# hsa.seu = ParsePanglaoDB(hsa.meta, merge = TRUE)