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FormatTrack()
|
Prepare Input for Creating Coverage Plot. |
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GetConsensusPeak()
|
Get Consensus Peak from Replicates with MSPC. |
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GetPlotData()
|
Plot Object Generated by ggcoverage. |
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LoadTrackFile()
|
Load Track File to Dataframe. |
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geom_base()
|
Add Base and Amino Acid Annotation to Coverage Plot. |
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geom_cnv()
|
Add CNV Annotation to Coverage Plot. |
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geom_coverage()
|
Layer for Coverage Plot. |
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geom_feature()
|
Add Feature Annotation to Coverage Plot. |
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geom_gc()
|
Add GC Content Annotation to Coverage Plot. |
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geom_gene()
|
Add Gene Annotation to Coverage Plot. |
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geom_ideogram()
|
Add Ideogram Annotation to Coverage Plot. |
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geom_link()
|
Add Links to Coverage Plot. |
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geom_peak()
|
Add Peak Annotation to Coverage Plot. |
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geom_protein()
|
Layer for Protein Coverage Plot. |
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geom_tad()
|
Add Contact Map to Coverage Plot. |
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geom_tad2()
|
Add Contact Map to Coverage Plot. |
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geom_transcript()
|
Add Transcript Annotation to Coverage Plot. |
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ggcoverage()
|
Create Coverage Plot. |
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ggprotein()
|
Create Mass Spectrometry Protein Coverage Plot. |
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theme_aa()
|
Theme for geom_base with Amino Acid. |
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theme_base()
|
Theme for geom_base. |
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theme_base2()
|
Theme for geom_base without margin. |
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theme_cnv()
|
Theme for geom_cnv. |
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theme_coverage()
|
Theme for geom_coverage. |
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theme_coverage2()
|
Theme for geom_coverage. |
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theme_feature()
|
Theme for geom_feature. |
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theme_gc()
|
Theme for geom_gc. |
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theme_gene()
|
Theme for geom_gene. |
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theme_ideogram()
|
Theme for geom_ideogram. |
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theme_link()
|
Theme for geom_link. |
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theme_peak()
|
Theme for geom_peak. |
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theme_protein()
|
Theme for geom_protein. |
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theme_protein2()
|
Theme for geom_protein. |
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theme_tad()
|
Theme for geom_tad. |
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theme_tad2()
|
Theme for geom_tad2. |
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theme_transcript()
|
Theme for geom_transcript. |