Stat Genomic Regions of Differential Peaks with Pie Plot.

Stat Genomic Regions of Differential Peaks with Pie Plot.

DiffPeakPie(
  deres,
  signif = "padj",
  signif.threshold = 0.05,
  l2fc.threshold = 1
)

Arguments

deres

Data frame contains all peaks.
signif

Significance criterion. For DESeq2 results, can be chosen from padj, pvalue. For edgeR results, can be chosen from FDR, PValue. Default: padj.
signif.threshold

Significance threshold to get differentially accessible/binding peaks. Default: 0.05.
l2fc.threshold

Log2 fold change threshold to get differentially accessible/binding peaks. Default: 1.

Value

List contains ggplot2 objects.