Parse GEO Data.

ParseGEO(acce, platform, supp.idx = 1, down.supp = FALSE, ...)

Arguments

acce	GEO accession number.
platform	Platform information/field.
supp.idx	The index of supplementary files to download. This should be consistent with `platform`. Default: 1.
down.supp	Logical value, whether to download supplementary files to create count matrix. If TRUE, always download supplementary files. If FALSE, use `ExpressionSet` (If contains non-integer or emoty, download supplementary files automatically). Default: FALSE.
...	Parameters for `getGEO`.

Value

List contains GEO object of platform, study information, raw count matrix and metadata.

Examples

# GSE149838.list = ParseGEO(acce = "GSE149838", platform = "GPL21626")
# GPL28369 is consistent with first supplementary file
# GSE147507.list = ParseGEO(acce = "GSE147507", platform = "GPL28369", supp.idx = 1)
# GSE122774.list = ParseGEO(acce = "GSE122774", platform = "GPL17021")