Visualize the Identified TFs.

Visualize the Identified TFs.

VizRegulator(
  infer.res,
  method = c("ChEA3", "BART2", "TFEA.ChIP"),
  label.gene = NULL,
  point.alpha = 0.5,
  label.color = "red"
)

Arguments

infer.res

The identidied result dataframe, can be the output of InferRegulator.
method

The method used to identify TFs, choose from "ChEA3", "BART2", "TFEA.ChIP". Default: "ChEA3".
label.gene

The highlight genes. Default: NULL.
point.alpha

The point alpha of identify TFs. Default: 0.5.
label.color

The text/point color for the highlight genes. Default: "red".

Value

A ggplot2 object.

Examples

# library(DEbPeak)
# infer.res = InferRegulator(genes = c("SMAD9","FOXO1","MYC","STAT1",'STAT3',"SMAD3"),
#                            method = "ChEA3", species = "Human")
# infer.plot = VizRegulator(infer.res = infer.res, method = "ChEA3")